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CTLA4

Cytotoxic T-lymphocyte–associated protein 4

Gene Number: 1493

Location: 2q33.2

Key Functions: Immune checkpoint regulation, T-cell activation control, immune tolerance, autoimmunity prevention


CTLA4 encodes cytotoxic T-lymphocyte-associated protein 4 (CTLA-4), a pivotal immune checkpoint receptor that plays a central role in maintaining immune equilibrium by restraining T-cell activation. Expressed on activated T lymphocytes and constitutively on regulatory T cells (Tregs), CTLA-4 functions as a critical inhibitory molecule that ensures immune responses remain proportionate and self-tolerance is preserved.


At the molecular level, CTLA-4 counterbalances the stimulatory activity of CD28, another T-cell surface receptor that binds to B7 ligands (CD80 and CD86) on antigen-presenting cells (APCs). While CD28 engagement promotes T-cell activation and proliferation, CTLA-4 binds these same ligands with significantly higher affinity, effectively sequestering them and dampening co-stimulatory signaling. This competitive inhibition results in decreased activation of downstream signaling cascades such as PI3K–Akt and NFAT, reduced production of interleukin-2 (IL-2), and overall suppression of T-cell proliferation and effector function.


Genetic variations in CTLA4 can disrupt this delicate regulatory network. The most extensively studied variant, +49A>G (rs231775), results in a threonine-to-alanine substitution that alters CTLA-4 protein trafficking and expression on the cell surface. This variant diminishes inhibitory signaling capacity, leading to hyperactive T-cell responses and a heightened risk of autoimmunity. Such polymorphisms have been consistently associated with several immune-mediated diseases, including:


  • Type 1 diabetes mellitus (T1D)

  • Rheumatoid arthritis (RA)

  • Systemic lupus erythematosus (SLE)

  • Autoimmune thyroid disorders (Graves’ disease, Hashimoto’s thyroiditis)

  • Celiac disease

  • Multiple sclerosis (MS)


Beyond its role in autoimmunity, CTLA-4 has profound implications in cancer immunotherapy. Tumor cells often exploit CTLA-4–mediated inhibition to evade immune detection. Pharmacological blockade of CTLA-4 using immune checkpoint inhibitors (notably ipilimumab) restores T-cell activity, enabling more effective antitumor immune responses. However, therapeutic inhibition of CTLA-4 can lead to immune-related adverse events, underscoring its indispensable role in maintaining immune self-regulation.

SNP ID
Your Genotype
Alternative Alleles
Interpretation
rs231775
Analyze your DNA to see your genotype
G
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rs3087243
Analyze your DNA to see your genotype
A
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rs231775
  • AA – Normal risk; baseline for autoimmune thyroid disease (R).

  • AG – ~1.5× higher risk of autoimmune thyroiditis compared to AA (R).

  • GG – ~2.3× higher risk of Hashimoto's thyroiditis and ~1.47× higher risk of Graves’ disease compared to AA (R).

Functional effect: The G allele (Thr→Ala) reduces CTLA-4 glycosylation and cell-surface expression, weakening T-cell inhibition and increasing autoimmune susceptibility.


rs3087243
  • AA – Normal risk for autoimmune diseases (R).

  • AG – ~1.5× higher risk for autoimmune diseases (R).

  • GG – ~1.5× higher risk for autoimmune diseases (R).

Functional effect: The G allele in the 3′-UTR CT60 variant may alter CTLA-4 expression or mRNA stability, modestly raising autoimmune risk in contexts like thyroid disease and rheumatoid arthritis.


Learn more about what you can do to mitigate risks, and other factors involved by becoming a member of GenesUnveiled today!

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